中国科学院全球共性挑战专项项目“芳香植物产业转化的共性技术合作”（063GJHZ2022038GC，2023.1-2025.12），主持人

中国科学院重点部署项目“黄河三角洲主要经济作物提质增效技术集成研究与示范”课题“耐盐碱芳香植物品种筛选与产业化技术研发与示范”（KFZD-SW-113，2020.1-2021.12），主持人

中国科学院A类战略性先导科技专项“美丽中国生态文明建设科技工程”项目“自然保护地健康管理与生态廊道设计技术”的课题“特色资源生物利用技术集成与产业化示范”（ XDA23080603，2019.1-2023.12），主持人

安徽省阜阳市人民政府项目“芳香植物产业化开发集成技术研究与示范”（2019C065，2018.10-2021.9），主持人

企业合作项目“芳香植物活性物质挖掘与化妆品功能研发”（2019C079，2019.1-2023.12），主持人

中国科学院重点部署项目课题“资源枯竭地区（内蒙古包头）植物生态修复技术集成与示范”（KFZD-SW-313，2017.1-2018.12），主持人

国家自然科学基金面上项目“LED光质对药用植物槲蕨配子体性别分化的调控机制研究”（81573519，2016.1-2019.12），主持人

科技部国际科技合作专项项目“新疆芳香植物新品种引进、选育与产业化研究”（2015DFR30960，2014.1-2016.12），主持人

科技部星火计划重大项目“新疆特色香料作物高效生产和加工关键技术集成与应用”（S2012G410023，2014.1-2015.12），主持人

中国科学院重点部署项目“LED光源在植物组培快繁生产中的应用研究及示范”（KZCC-EW-103-3，2014.1-2015.12），主持人

内蒙古自治区包头市人民政府项目“半干旱区域资源枯竭型地区环境修复植物资源筛选及快繁技术研究与示范”（2013.1-2015.12），主持人

科技部农业科技成果转化资金项目“薰衣草新品种中试与示范”（SQ2013EC4910021，2013.7-2014.12），主持人

企业合作项目“景观植物资源筛选与产业化关键技术研究与示范”（2012.1-2017.12），主持人

国家科技支撑计划项目“生物多样性保护与濒危物种保育技术研究与示范”的子课题“重要珍稀植物资源的可持续利用技术体系应用与示范”（2012BAC01B05，2012.1-2015.12），主持人

2025

Yue Qi^#, Ye-Qin Huang^#, Hui Li, Zong-Xin Jin, Riccardo Amorati*, Lei Shi*. 2025. Effect of fatty acid composition on rosemary antioxidants in stabilizing woody edible oils: a kinetic and machine learning analysis of volatiles under accelerated oxidation. Food Chemistry, 492: 145214.

Yan-Mei Dong#, Zi-Ling Wei#, Jing-Rui Li, Wen-Ying Zhang, Fei Gao, Fei Xia, Hong-Tong Bai, Hui Li*, Lei Shi*. 2025. Exogenous application of methyl jasmonate affects the transcriptome of terpenoid biosynthesis genes in lavender and functional characterization of the candidate gene LabHLH74. Plant Physiology and Biochemistry, 227: 110085.

Ya-Nan Zhang, Jin-Zheng Zhang, Jia-Hui Miao, Guo-Feng Sun, Hong-Tong Bai, Jian-Hua Xiao, Mei-Yu Sun*, Lei Shi*. 2025. Micromorphology and molecular insights into glandular trichomes in two different thymes: glandular trichomes formation process and the function of the main regulator TqHD1.Plant, Cell & Environment, 48:6269-6284.

Mei-Yu Sun^#, Jia-Hui Miao^#, Ya-Nan Zhang, Yuan-Peng Hao, Jin-Zheng Zhang, Hui Li, Hong-Tong Bai, Lei Shi*.  2025. Antioxidant activity analysis of new interspecific hybrid germplasm thyme and oregano essential oils with different chemotypes. BMC Plant Biology, 25: 33.

2024

Mei-Yu Sun^#, Ya-Nan Zhang^#, Yuan-Peng Hao^#, Jia-Hui Miao, Guo-Feng Sun, Jian-Hua Xiao, Xiao Yang, Jin-Zheng Zhang*, Lei Shi*. 2024. Antioxidant and antibacterial activities of Chinese native thyme essential oils with different chemotypes.Molecules, 29: 6035.

Yan-Mei Dong, Zi-Ling Wei, Wen-Ying Zhang, Jing-Rui Li, Mei-Xian Han, Hong-Tong Bai, Hui Li*, Lei Shi*. 2024. LaMYC7, a positive regulator of linalool and caryophyllene biosynthesis, confers plant resistance toPseudomonas syringae. Horticulture Research, 11: uhae044.

Ye-Qin Huang, Meng-Ting Ding, Di Wang, Hui Li, Fei Xia, Hong-Tong Bai, Mei-Yu Sun, Mei-Ling Mo, Yan-Mei Dong*, Lei Shi*. 2024. Chemical diversity and antimelanoma potential of rosemary essential oils: unveiling mechanistic insights through quantitative proteomics. Industrial Crops & Products, 215: 118652.

Lian-Hua Zhang, Jun-Wei Ge, Fei Gao, Min Yang, Hui Li, Fei Xia, Hong-Tong Bai, Xiang-Shu Piao, Zhi-Ying Sun, Lei Shi*. 2024.Rosemary leaf powder improves egg quality, antioxidant status, gut barrier function, and cecal microbiota and metabolites of late-phase laying hens. Animal Nutrition, 17: 325-334.

Wen-Ying Zhang^#, Jing-Rui Li^#, Yan-Mei Dong, Ye-Qin Huang, Yue Qi, Hong-Tong Bai, Hui Li*, Lei Shi*. 2024.Genome-wide identification and expression of BAHD acyltransferase gene family shed novel insights into the regulation of linalyl acetate and lavandulyl acetate in lavender. Journal of Plant Physiology, 292: 154143.

2023

石雷*, 刘政安, 王利军, 舒庆艳, 孙美玉, 段伟, 李慧. 2023. 发展特色资源植物 助力美丽中国建设. 中国科学院院刊, 38(12): 1856-1865.

Yan-Mei Dong^#, Zi-Ling Wei^#, Rui Yang, Ya-Nan Zhang, Mei-Yu Sun, Hong-Tong Bai, Mei-Ling Mo, Chun-Lei Yao, Hui Li*, Lei Shi*. 2023. Chemical compositions of essential oil extracted from eight thyme species and potential biological functions. Plants, 12: 4164.

Zheng-Yi Ling, Jing-Rui Li, Yan-Mei Dong, Wen-Ying Zhang, Hong-Tong Bai, Shu Li, Su Wang, Hui Li*, Lei Shi*. 2023. Terpene produced by coexpression of the TPS and P450 genes from Lavandula angustifolia protects plants from herbivore attacks during budding stages. BMC Plant Biology, 23: 477.

Jing-Rui Li^#, Hui Li^#, Yi-Ming Wang^#, Wen-Ying Zhang, Di Wang, Yan-Mei Dong, Zheng-Yi Ling, Hong-Tong Bai, Xiao-Hua Jin, Xiao-Di Hu*, Lei Shi*. 2023. Decoupling subgenomes within hybrid lavandin provide new insights into speciation and monoterpenoid diversification of Lavandula. Plant Biotechnology Journal, 21: 2084-2099.

Lian-Hua Zhang^#, Jun-Wei Ge^#, Fei Gao, Min Yang, Hui Li, Fei Xia, Hong-Tong Bai, Xiang-Shu Piao, Zhi-Ying Sun*, Lei Shi*. 2023.Rosemary extract improves egg quality by altering gut barrier function, intestinal microbiota, and oviductal gene expressions in late-phase laying hens. Journal of Animal Science and Biotechnology, 14: 121.

Ya-Nan Zhang, Di Wang, Hui Li, Hong-Tong Bai, Mei-Yu Sun*, Lei Shi*. 2023. Formation mechanism of glandular trichomes involved in the synthesis and storage of terpenoids in lavender. BMC Plant Biology, 23: 307.

Fei Xia^#, Hai-Ping Hao^#, Ying Qi, Hong-Tong Bai, Hui Li*, Zhen-Xia Shi*, Lei Shi*. 2023. Effect of salt stress on microbiome structure and diversity in chamomile (Matricaria chamomilla L.) rhizosphere soil. Agronomy, 13: 1444.

Mei-Yu Sun^#, Ning-Ning Liu^#, Jia-Hui Miao, Ya-Nan Zhang, Yuan-Peng Hao, Jin-Zheng Zhang, Hui Li, Hong-Tong Bai, Lei Shi*. 2023. Creation of new oregano genotypes with different terpene chemotypes via inter- and intraspecific hybridization. International Journal of Molecular Sciences, 24: 7320.

Yue Qi, Ye-Qin Huang, Yan-Mei Dong, Wen-Ying Zhang, Fei Xia, Hong-Tong Bai , Zora Dajic Stevanovic, Hui Li*, Lei Shi*. 2023. Effective improvement of the oxidative stability of Acer truncatum Bunge seed oil, a new woody oil food resource by rosemary extract.Antioxidants, 12: 889.

Rui Yang, Yan-Mei Dong, Fei Gao, Jing-Yi Li, Zora Dajic Stevanovic, Hui Li*, Lei Shi*. 2023. Comprehensive analysis of secondary metabolites of four ethnically medicinal thyme species and the antioxidant activities in vitro. Molecules, 28: 2582.

Yuan-Peng Hao, Xiao-Qi Guo, Wen-Ying Zhang, Fei Xia, Mei-Yu Sun, Hui Li, Hong-Tong Bai, Hong-Xia Cui, Lei Shi*.2023. ¹ H NMR–based metabolomics reveals the antimicrobial action of oregano essential oil against Escherichia coli and Staphylococcus aureus in broth, milk, and beef. LWT - Food Science and Technology, 176: 114540.

Yuan-Peng Hao, Jia-Mu Kang, Xiao-Qi Guo, Mei-Yu Sun, Hui Li, Hong-Tong Bai, Hong-Xia Cui, Lei Shi*. 2023. pH-responsive chitosan-based film containing oregano essential oil and black rice bran anthocyanin for preserving pork and monitoring freshness. Food Chemistry, 403: 134393.

Mei-Yu Sun^#, Li Zhu^#, Ya-Nan Zhang, Ning-Ning Liu, Jin-Zheng Zhang, Hui Li, Hong-Tong Bai, Lei Shi*. 2023. Creation of new germplasm resources, development of SSR markers, and screening of monoterpene synthases in thyme. BMC Plant Biology, 23: 13.

Ye-Qin Huang, He-Ran Xu, Meng-Ting Ding, Jing-Yi Li, Di Wang, Hui Li, Mei-Yu Sun, Fei Xia, Hong-Tong Bai, Min Wang, Mei-Ling Mo, Lei Shi*. 2023. Screening of rosemary essential oils with different phytochemicals for antioxidant capacity, keratinocyte cytotoxicity, and anti-proliferative activity. Molecules, 28(2): 586.

Mei-Yu Sun^#, Ya-Nan Zhang^#, Hong-Tong Bai, Guo-Feng Sun, Jin-Zheng Zhang*, Lei Shi*. 2023. Population diversity analyses provide insights into key horticultural traits of Chinese native thymes. Horticulture Research, 10: uhac262.

2022

Fei Gao^#, Lian-Hua Zhang^#, Hui Li, Fei Xia, Hong-Tong Bai, Xiang-Shu Piao, Zhi-Ying Sun, Hong-Xia Cui, Lei Shi*. 2022. Dietary Oregano Essential Oil Supplementation Influences Production performance and gut microbiota in late-phase laying hens fed wheat-based diets. Animals, 12: 3007.

Lian-Hua Zhang, Fei Gao, Jun-Wei Ge, Hui Li, Fei Xia, Hong-Tong Bai, Xiang-Shu Piao, Lei Shi*. 2022. Potential of aromatic plant-derived essential oils for the control of foodborne bacteria and antibiotic resistance in animal production: A review.Antibiotics, 11: 1673.

Yuan-Peng Hao, Xiao-Qi Guo, Rui Yang, Yi-Hao Yan, Mei-Yu Sun, Hui Li, Hong-Tong Bai, Hong-Xia Cui, Jing-Yi Li*, Lei Shi*. 2022. Unraveling the biosynthesis of carvacrol in different tissues of Origanum vulgare.International Journal of Molecular Sciences, 23: 13231.

Xiao-Qi Guo, Yuan-Peng Hao, Wen-Ying Zhang, Fei Xia, Hong-Tong Bai, Hui Li*, Lei Shi*. 2022. Comparison of Origanum essential oil chemical compounds and their antibacterial activity against Cronobacter sakazakii.Molecules, 27: 6702.

Yuan-Peng Hao, Xiao-Qi Guo, Wen-Ying Zhang, Fei Xia, Evan Yang, Hui Li, Hong-Tong Bai, Lei Shi*. 2022. Label-free quantitative proteomics reveals the antibacterial mechanism of rosemary essential oil against Salmonella enterica serovar Typhimurium.Industrial Crops & Products, 189: 115757.

Hai-Ping Hao^#, Fei Xia^#, Hang-Tong Bai, Xun-You Yan, Hong-Xia Cui, Xiao-Ming Xie, Lei Shi*.2022. Impact of Litsea cubeba inter-row cover on the structure of bacterial community in the tea plantation. Annals of Microbiology, 72: 37.

Hai-Ping Hao^#, Yan-Mei Dong^#, Xiao-Pei Zhu, Hong-Tong Bai, Hui Li, Jian Gong, Amjad Farooq, Shi Lei*. 2022. ABA affects the florets number of inflorescence by regulating IAA transport and accumulation in Lavandula angustifolia. Biologia Plantarum, 66: 298-307.

Jing-Rui Li, Mei-Yu Sun, Hui Li, Zheng-Yi Ling, Di Wang, Jin-Zheng Zhang, Lei Shi*. 2022. Full-length transcriptome-referenced analysis reveals crucial roles of hormone and wounding during induction of aerial bulbils in lily.BMC Plant Biology, 22: 15.

Mei-Yu Sun^#, Ya-Nan Zhang^#, Li Zhu, Ning-Ning Liu, Hong-Tong Bai, Guo-Feng Sun, Jin-Zheng Zhang*, Lei Shi*. 2022. Chromosome-level assembly and analysis of the Thymus genome provide insights on glandular secretory trichome formation and monoterpenoid biosynthesis in thyme. Plant Communications, 3: 100413.

Shu Li^#, Hui Li^#, Qiong Zhou, Fan Zhang, Nicolas Desneux, Su Wang*, Lei Shi*. 2022. Essential oils from two aromatic plants repel the tobacco whitefly Bemisia tabaci. Journal of Pest Science, 95: 971-982.

Yan-Mei Dong, Wen-Ying Zhang, Jing-Rui Li, Di Wang, Hong-Tong Bai, Hui Li*, Lei Shi*. 2022. The transcription factor LaMYC4 from lavender regulates volatile Terpenoid biosynthesis. BMC Plant Biology, 22:289.

Yan-Mei Dong, Jing-Rui Li, Wen-Ying Zhang, Hong-Tong Bai, Hui Li*, Lei Shi*. 2022. Exogenous application of methyl jasmonate affects the emissions of volatile compounds in lavender (Lavandula angustifolia). Plant Physiology and Biochemistry, 185: 25-34.

Yi Wang^#, Li-Min Lu^#, Jing-Rui Li^#, Hua-Yang Li, Yi-Chen You, Shu-Ying Zang, Yong-Qing Zhang, Jian-Fei Ye, Ze-Min Lv, Zhao-Yu Zhang, Yong-Sheng Qin, Hong-Ling Zhang, Fei Xia, Hui Li, Hui-Jin Zhang, Pei-Ge Fan*, Lei Shi*, Zhen-Chang Liang*, Hong-Xia Cui*. 2022. A chromosome-level genome of Syringa oblata provides new insights into chromosome formation in Oleaceae and evolutionary history of lilacs. The Plant Journal, 111(3): 836-848.

Yuan-Peng Hao, Jia-Mu Kang, Rui Yang, Hui Li, Hong-Xia Cui, Hong-Tong Bai, Andrey Tsitsilin, Jing-Yi Li*, Lei Shi*. 2022. Multidimensional exploration of essential oils generated via eight oregano cultivars: compositions, chemodiversities, and antibacterial capacities. Food Chemistry, 374: 131629.

Zhen-Xu Liang, Jin-Zheng Zhang, Chao Xin, Dong Li, Mei-Yu Sun*, Lei Shi*. 2022. Analysis of edible characteristics, antioxidant capacities, and phenolic pigment monomers in Lilium bulbs native to China. Food Research International, 151: 110854.

2021

Jing-Rui Li^#, Yi-Ming Wang^#, Yan-Mei Dong, Wen-Ying Zhang, Di Wang, Hong-Tong Bai, Kui Li*, Hui Li*, Lei Shi*. 2021. The chromosome-based lavender genome provides new insights into Lamiaceae evolution and terpenoid biosynthesis. Horticulture Research, 8:53.

Yuan-Peng Hao, Jing-Yi Li*, Lei Shi*. 2021. A Carvacrol-rich essential oil extracted from oregano (Origanum vulgare ‘Hot & Spicy') exerts potent antibacterial effects against Staphylococcus aureus. Frontiers in Microbiology, 12:741861.

Yuan-Peng Hao, Jing-Yi Li, Wen-Ying Zhang, Mei-Yu Sun, Hui Li, Fei Xia, Hong-Xia Cui, Hong-Tong Bai, Lei Shi*. 2021. Analysis of the chemical profiles and anti-S. aureus activities of essential oils extracted from different parts of three oregano cultivars. Foods, 10: 2328.

Yuan-Peng Hao, Jia-Mu Kang, Xiao-Qi Guo, Rui Yang, Yu-Liang Chen, Jing-Yi Li*, Lei Shi*. 2021. Comparison of nutritional compositions and essential oil profiles of different parts of a dill and two fennel cultivars. Foods, 10: 1784.

闫一皓, 王頔*, 李静一, 张文颖, 郝渊鹏, 夏菲, 李慧, 白红彤, 石雷*. 2021. 60Co-γ射线辐照种子对牛至形态学与挥发性成分的影响. 植物学报, 56 (5): 533-543.

郝海平, 白红彤, 夏菲, 郝渊鹏, 李慧, 崔洪霞, 谢晓明, 石雷*. 2021. 茶-山苍子间作对茶园土壤微生物群落结构的影响. 中国农业科学, 54(18): 3959-3969.

张照宇, 王清芸, 石雷, 余文刚, 张永清, 崔洪霞*. 2021. 丁香属次生代谢产物及其与系统演化和地理环境的关联. 植物学报, 56(4): 470-479.