中国科学院B类先导项目（1145万，执行期：2024年9月-2029年10），主持人

中国科学院国家级人才引进配套项目（A类）（700万，执行期：2024年1月-2026年12月） ，主持人

国家自然科学基金委创新人才（300万，执行期：2022年1月-2024年12月），主持人

北京市农林科学院杰出科学家培育计划 植物miRNA进化研究 （300万，执行期：2022年1月-2026年12月） ，主持人

国家自然科学基金委面上项目 植物miRNA及其靶基因研究 （58万，执行期：2021年1月-2024年12月），主持人

北京市设施农业新种质创制和品种选育联合攻关项目 生菜种质创制及品种选育（78万，执行期：2021年1月-2024年12月），主持人

北京市农林科学院重点项目 生菜种质资源鉴定与创制 （50万，执行期：2023年1月-2023年12月），主持人

北京市农林科学院重点项目 新种质资源收集与鉴定 （80万，执行期：2022年1月-2022年12月），主持人

北京市农林科学院重点项目 基因编辑II期（450万， 执行期：2020年1月-2022年12月），主持人

北京市农林科学院重点项目 基因编辑I期 （400万，执行期：2018年1月-2019年12月），主持人

北京市农林科学院重点项目 精准育种技术体系开发（198万，执行期：2018年1月-2018年12月），主持人

北京市财政项目 高通量测序平台构建 （849万，执行期：2018年1月-2018年12月），主持人

北京市农林科学院青年英才 启动经费（100万，执行期：2017年1月-2018年12月），主持人

陶氏化学重点项目 高通量组学平台构建 （200万美元，执行期：2015年1月-2016年12月），主持人

北京市农林科学院重点项目 表型组学研究 （90万，执行期：2019年1月-2023年12月），主持人

北京市农林科学院重点项目 基因组学研究 （250万，执行期：2019年1月-2023年12月），主持人

2025

Zhong-Long Guo, Yi-Xiang Yang, Xiao-Zeng Yang*. 2025. Fast and furious: The rapid turnover of microRNAs in plants. Journal of Systematics and Evolution, 63(3): 510-522.

Hao He, Yong-Xin Zhao, Deng-Yu Zheng, Hui-Yun Kuang, Fei Shen, Kang He, Hai-Yan Zhang, Chang-Jiang Zhao, Lu Jiang, Da Xiao, Su Wang, Zhen-Ying Wang, Shuai Zhan, Jian-Hua Wei*, Xiao-Zeng Yang*, Zhong-Yi Wu*, Chun Zhang*. 2025. Chromosome-level genome assembly of Monolepta hieroglyphica, two-spotted leaf beetle (Coleoptera: Chrysomelidae). Scientific Data, 12(1): 1.

2024

Wen Ren, Zi Shi, Yong-Xin Zhao, Qian Zhang, Miao-Yi Zhou, Chen Cheng, Meng-yuan Liu, Bing-Bing Zhao, Yu-Hui Guo, He-Wei Du*, Xiao-Zeng Yang*, Ya Liu*. 2024. Transcriptional analysis of maize elite inbred line Jing24 and the function of ZmMAPKKK21 in the response to drought stress. Agriculture Communications, 2(4): 100063.

Xing-Chen Yu, Jia-Wen Zhao, Zhen-Xiu Xu, Jun-Rong Wei, Qi Wang, Feng Shen, Xiao-Zeng Yang*, Zhong-Long Guo*. 2024. AIpollen: An Analytic Website for Pollen Identification Through Convolutional Neural Networks. Plants, 13(22): 3118.

Jia-Xin Yang, Xia-Yang Lu, Su-Ying Hu, Xiao-Zeng Yang*, Xiao-Yan Cao*. 2025. microRNA858 represses the transcription factor gene SbMYB47 and regulates flavonoid biosynthesis in Scutellaria baicalensis. Plant Physiology, 197(1): kiae607.

Zhong-Long Guo, Shao-Xuan Luo, Qi Wang, Yi-Xiang Yang, Ya-Wen Bai, Jun-Rong Wei, Dong Wang, Yi-Fan Duan, Xiao-Zeng Yang*, Yong Yang*. 2024. ANAgdb: a multi-omics and taxonomy database for ANA-grade. BMC Plant Biology, 24(1): 882.

Jia-Wen Zhao, Zhong-Long Guo*, Xiao-Zeng Yang*. 2024. sRNAminer, a swiss army knife in small RNA research. Science China Life Sciences, 67(10): 2289-2290.

2023

Fei Shen, Chen-Yang Hu, Xin Huang, Hao He, Deng Yang, Ji-Rong Zhao*, Xiao-Zeng Yang*. 2023. Advances in alternative splicing identification: deep learning and pantranscriptome. Frontiers in Plant Science, 14: 1232466.

Fei Shen, Ya-Juan Qin, Rui Wang, Xin Huang, Ying Wang, Tian-Gang Gao, Jun-Na He, Yue Zhou, Yuan-Nian Jiao, Jian-Hua Wei*, Lei Li*, Xiao-Zeng Yang*. 2023. Comparative genomics reveals a unique nitrogen-carbon balance system in Asteraceae. Nature Communications, 14(1): 4334.

Shuan Yu, Jiang-Chuan Fan, Xian-Ju Lu, Wei-Liang Wen, Song Shao, Dong Liang, Xiao-Zeng Yang*, Xin-Yu Guo*, Chun-Jiang Zhao*. 2023. Deep learning models based on hyperspectral data and time-series phenotypes for predicting quality attributes in lettuces under water stress. Computers and Electronics in Agriculture, 211: 108034.

Zhong-Long Guo, Jun-Rong Wei, Zhen-Xiu Xu, Chen-Xue Lin, Ye Peng, Qi Wang, Dong Wang, Xiao-Zeng Yang*,  Ke-Wang Xu*. 2023. HollyGTD: An integrated database for holly (Aquifoliaceae) genome and taxonomy. Frontiers in Plant Science, 14: 1220925.

Fei Shen, Hao He, Xin Huang, Deng Yang, Xiao-Zeng Yang*. 2023. Insights into the convergent evolution of fructan biosynthesis in angiosperms from the highly characteristic chicory genome. New Phytologist, 238(3): 1245-1262.

Zhong-Long Guo, Bo Li, Jian-Jun Du, Fei Shen, Yong-Xin Zhao, Deng Yang, Zheng Kuang, Yi-Han Tao, Miao-Miao Wan, Xian-Ju Lu, Dong Wang, Ying Wang, Ying-Yan Han, Jian-Hua Wei, Lei Li, Xin-Yu Guo*, Chun-Jiang Zhao*, Xiao-Zeng Yang*. 2023. LettuceGDB: the community database for lettuce genetics and omics. Plant Communications, 4(1) :100425-100425.

2022

Zhong-Long Guo, Zheng Kuang, Deng Yang, Lei Li*, Xiao-Zeng Yang*. 2022. Identification of species-specific microRNAs provides insights into dynamic evolution of microRNAs in plants. International Journal of Molecular Sciences, 23(22): 14273.

Zhong-Long Guo, Zheng Kuang, Yi-Han Tao, Hao-Tian Wang, Miao-Miao Wan, Chen Hao, Fei Shen, Xiao-Zeng Yang*, Lei Li*. 2022. Miniature inverted-repeat transposable elements drive rapid microRNA diversification in angiosperms. Molecular Biology and Evolution, 39(11): msac224.

Xiao-Zeng Yang*, Turgay Unver, Xiu-Ren Zhang, and Lei Li. 2022. Editorial: Roles and regulatory mechanisms of microRNA in plant development, evolution, and adaptation. Frontiers in Plant Science, 13: 995517.

Deng Yang, Hao-Lin Zhang, Hai-Long Wang, Guo-Fang Xing, Biao Lei, Zheng Kuang, Yong-Xin Zhao, Cong-Cong Li, Shao-Jun Dai, Xiao-Zeng Yang*, Jian-Hua Wei*, Jie-Wei Zhang*. 2022. The construction and exploration of a comprehensive microRNA centered regulatory network in foxtail millet (Setaria italica L.). Frontiers in Plant Science, 13: 848474.

Jian-Jun Du, Bo Li, Xian-Ju Lu, Xiao-Zeng Yang*, Xin-Yu Guo*, Chun-Jiang Zhao*. 2022. Quantitative phenotyping and evaluation for lettuce leaves of multiple semantic components. Plant Methods, 18(1): 54.

Zhong-Long Guo, Zheng Kuang, Yong-Xin Zhao, Deng Yang, Hao He, Miao-Miao Wan, Yi-Han Tao, Dong Wang, Jian-Hua Wei, Lei Li*, Xiao-Zeng Yang*. 2022. PmiREN2.0: from data annotation to functional exploration of plant microRNAs. Nucleic Acids Research, 50(D1): D1475-D1482.

2021

Deng Yang, Ya-Juan Qin, Pan Yang, Jian-Jun Du, Zheng Kuang, Yong-Xin Zhao, Ying Wang, Da-Yong Li, Jian-Hua Wei, Xin-Yu Guo*, Lei Li*, Xiao-Zeng Yang*. 2021. Comprehensive annotation and functional exploration of microRNAs in lettuce. Frontiers in Plant Science, 12: 781836.

Jing Yang, Zhong-Long Guo, Wen-Tao Wang, Xiao-Yan Cao*, Xiao-Zeng Yang*. 2020. Genome-wide characterization of SPL gene family inCodonopsis pilosulareveals the novel roles ofCpSPL2andCpSPL10in promoting the accumulation of secondary metabolites and growth ofC. pilosulahairy root. Genes (Basel). 12(10):1588.

Jian-Jun Du, Jiang-Chuan Fan, Chuan-Yu Wang, Xian-Ju Lu, Ying Zhang, Wei-Liang Wen, Sheng-Jin Liao, Xiao-Zeng Yang*, Xin-Yu Guo*, Chun-Jiang Zhao*. 2021. Greenhouse-based vegetable high-throughput phenotyping platform and trait evaluation for large-scale lettuces. Computers and Electronics in Agriculture, 186: 106193.

Yong-Xin Zhao, Zheng Kuang, Ying Wang, Lei Li*, Xiao-Zeng Yang*. 2021. MicroRNA annotation in plants: current status and challenges. Briefings in Bioinformatics, 22(5): bbab075.

Xiao-Zeng Yang*, Elane Fishilevich, Marcelo A. German, Premchand Gandra, Robert E. McEwan, André Billion, Eileen Knorr, Andreas Vilcinskas, Kenneth E. Narva*. 2021. Elucidation of the microRNA transcriptome in western corn rootworm reveals its dynamic and evolutionary complexity. Genomics, Proteomics & Bioinformatics, 19(5): 800-814.

Xiao-Chang Yin, Francisco J. Romero-Campero*, Pedro de los Reyes, Peng Yan, Jing Yang, Guang-Mei Tian, Xiao-Zeng Yang, Xiao-Rong Mo, Shuang-Shuang Zhao, Myriam Calonje*, Yue Zhou*. 2021. H2AK121ub in Arabidopsis associates with a less accessible chromatin state at transcriptional regulation hotspots. Nature Communications, 12(1): 315.

2020

Jian-Jun Du, Xian-Ju Lu, Jiang-Chuan Fan, Ya-Juan Qin, Xiao-Zeng Yang*, Xin-Yu Guo*. 2020. Image-based high-throughput detection and phenotype evaluation method for multiple lettuce varieties. Frontiers in Plant Science, 11: 563386.

Bastian Fromm*, Andreas Keller, Xiao-Zeng Yang, Marc R. Friedländer, Kevin J. Peterson, and Sam Griffiths-Jones. 2020. Quo vadis microRNAs? Trends in Genetics, 36(7): 461-463.

Jing Yang, Xiao-Zeng Yang, Zheng Kuang, Bin Li, Xia-Yang Lu, Xiao-Yan Cao*, Jie-Fang Kang*. 2020. Selection of suitable reference genes for qRT-PCR expression analysis of Codonopsis pilosula under different experimental conditions. Molecular Biology Reports, 47(6): 4169–4181.

Jing Yang, Xiao-Zeng Yang, Bin Li, Xia-Yang Lu, Jie-Fang Kang, Xiao-Yan Cao*. 2020. Establishment of in vitro culture system for Codonopsis pilosula transgenic hairy roots. 3 Biotech, 10(3): 137.

Ying Wang, Zheng Kuang, Lei Li, Xiao-Zeng Yang*. 2020. A bioinformatics pipeline to accurately and efficiently analyze the microRNA transcriptomes in plants. Journal of Visualized Experiments (JoVE), 155: e59864.

Zhong-Long Guo, Zheng Kuang, Ying Wang, Yong-Xin Zhao, Yi-Han Tao, Chen Cheng, Jing Yang, Xia-Yang Lu, Chen Hao, Tian-Xin Wang, Xiao-Yan Cao, Jian-Hua Wei, Lei Li*, Xiao-Zeng Yang*. 2020. PmiREN: a comprehensive encyclopedia of plant miRNAs. Nucleic Acids Research, 48(D1): D1114–D1121.

2019

Zheng Kuang, Ying Wang, Lei Li*, Xiao-Zeng Yang*. 2019. miRDeep-P2: accurate and fast analysis of the microRNA transcriptome in plants. Bioinformatics, 35(14): 2521-2522.

注：仅注2019年及以后发表文章