2025

Wang Q.^#, Luo S.^#, Yang Y., Bai Y., Wei J., Xu K.-W., Yang Y., Li M., Yang X.*, Duan Y.*, Guo Z.* 2025. WP-MOD: a multi-omics and taxonomy database for woody plants. Plant Communications. 6(4), 101290.

Guo Z.^#, Yang Y., Yang X.* 2025. Fast & Furious: the rapid turnover of microRNAs in plants. Journal of Systematics and Evolution. 63(3): 510–522.

Guo Z.^#, Guo J.^#, Wei Z.^#, Zhang R.^#, McMahan S., Nie S., Yan X., Zhou S., Yun Q, Wu J., Ge J., Yang Y.*, Xue J.*, Mao J.* 2025. Near-gapless telomere-to-telomere reference nuclear genome and variable mitochondrial genome of Amborella trichopoda. Journal of Genetics and Genomics. doi: 10.1016/j.jgg.2025.04.016.

Guo, Z., Kuang, Z., Yang, X. 2025. The Usage of PmiREN (Plant miRNA ENcyclopedia). In: de Folter, S. (eds) Plant MicroRNAs. Methods in Molecular Biology, vol 2900. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-4398-3_4

Liu, C., Li, A., Guo, Z., Chen, N., Wang, Y., Tang, W., Wu, Y., Liu, J., Wang, Z., Li, L., and He, X. Q. 2025. MicroRNA analysis reveals two modules that antagonistically regulate xylem tracheary element development in Arabidopsis. Plant Cell, koaf011.

2024

Guo Z.^#, Luo S.^#, Wang Q.^#, Yang Y., Bai Y., Wei J., Wang D., Duan Y.*, Yang X.*, and Yang Y.* 2024. ANAgdb: a multi-omics and taxonomy database for ANA-grade. BMC Plant Biology.24(1): 882.

Yu X.^#, Zhao J.^#, Xu Z.^#, Wei J., Wang Q., Shen F., Yang X., Guo Z.* 2024. AIpollen: an analytic website for pollen identification through convolutional neural networks. Plants. 13(22): 3118.

Xu Z., Wei H., Li M., Qiu Y., Li L.*, Xu K.-W.*, Guo Z.* 2024. Impact of chromosomal fusion and transposable elements on the genomic evolution and genetic diversity of Ilex species. Plants. 13(18): 2649.

Guo Z., Dzinyela R., Yang L., Hwarari D.* 2024. bZIP transcription factors: structure, modification, abiotic stress responses and application in plant improvement. Plants. 13(15): 2058.

Guo Z.^#, Xu Z.^#, Li L.* and Xu K.-W.* 2024. Species-Specific miRNAs contribute to the divergence between deciduous and evergreen species in Ilex. Plants. 13(11): 1429.

Zhao J.^#, Guo Z.*, and Yang X.* 2024. sRNAminer, a swiss army knife in small RNA research. SCIENCE CHINA Life Sciences. 67(10): 2289-2290.

Hao Y.^#, Yang Y.^#, Tu H.^#, Guo Z.^#, Chen P., Chao X., Yuan Y., Wang Z., Miao X., Zou S., Li D., Yang Y., Wu C., Li B., Li L.*, Cai H.* 2024. A transcription factor complex in Dictyostelium enables adaptive changes in macropinocytosis during the growth-to-development transition. Developmental Cell. 59(5): 645–660.e8.

Yuan M.-L.*, Bao M.-H., Zhang Q.-L., Guo Z., Li M, Wang J. 2024. Mitochondrial phylogeography of grassland caterpillars (Lepidoptera: Lymantriinae: Gynaephora) endemic to the Qinghai–Tibetan plateau. Ecology and Evolution. 14(9): e70270.

高羽^#, 袁明龙*, 郭仲龙*. (2024). 牧草microRNA研究现状及展望. 草业科学. 41(12):1-11.

2023

Guo Z.^#, Li B.^#, Du J., Shen F., Tao Y., Wan M., Zhao Y., Deng Y., Kuang Z., Wang D., Wang Y., Wei J., Li L., Guo X.*, Zhao C.*, Yang X.* 2023. LettuceGDB: the community database for lettuce genetics and omics. Plant Communications. 4(1): 100425.

Guo Z.^#, Wei J.^#, Xu Z., Lin C., Peng Y., Wang Q., Wang D., Yang X.*, Xu K-W.* 2023. HollyGTD: an integrated database for holly (Aquifoliaceae) genome and taxonomy. Frontiers in Plant Science. 14: 1220925.

Song H.*, Guo Z., Duan Z., Li M., Zhang J. 2023. WRKY transcription factors in Arachis hypogaea and its donors: From identification to function prediction. Plant Physiology and Biochemistry. 204: 108131.

2022

Guo Z., Kuang Z., Tao Y., Wang H., Wan M., Hao C., Shen F., Yang X.*, Li L.* 2022. Miniature inverted-repeat transposable elements drive rapid microRNA diversification in angiosperms. Molecular Biology and Evolution. 39: msac224.

Guo Z.^#, Kuang Z^#., Zhao Y^#., Deng Y. ^#, He H., Wan M., Tao Y., Wang D., Wei J., Li L.* Yang X.* 2022. PmiREN2.0: from data annotation to functional exploration of plant microRNAs. Nucleic Acids Research. 50: D1475-D1482.

Guo Z., Kuang Z., Deng Y., Li L.*, and Yang X.* 2022. Identification of species-specific microRNAs provides insights into dynamic evolution of microRNAs in plants. International Journal of Molecular Sciences. 23: 14273.

Yang Y., Hao C., Du J., Xu L., Guo Z., Li D., Cai H., Guo H., Li L.* 2022. The carboxy terminal transmembrane domain of SPL7 mediates interaction with RAN1 at the endoplasmic reticulum to regulate ethylene signaling in Arabidopsis. New Phytologist. 236(3): 878-892.

Song H., Guo Z., Zhang X., Sui J. 2022. De novo genes in Arachis hypogaea cv. Tifrunner: systematic identification, molecular evolution, and potential contributions to cultivated peanut. Plant Journal. 111(4): 1081-1095.

Zhang Y., Tu H., Hao Y., Li D., Yang Y., Yuan Y., Guo Z., Li L., Wang H., & Cai H. 2022. Oligopeptide transporter Slc15A modulates macropinocytosis in Dictyostelium by maintaining intracellular nutrient status. Journal of Cell Science. 135(7): jcs259450.

2021

Zhang H., Guo Z., Zhuang Y., et al. 2021. MicroRNA775 regulates intrinsic leaf size and reduces cell wall pectin levels by targeting a galactosyltransferase gene in Arabidopsis. Plant Cell. 33: 581-602.

Jiang A., Guo Z., Pan J., Yang Y., Zhuang Y., Zuo D., Hao C., Gao Z., Xin P., Chu J., Zhong S., Li L. 2021. The PIF1-miR408-PLANTACYANIN repression cascade regulates light-dependent seed germination. Plant Cell. 33: 1506-1529.

Yang J., Guo Z., Wang W., Cao X., Yang X. 2021. Genome-wide characterization of SPL gene family in Codonopsis pilosula reveals the functions of CpSPL2 and CpSPL10 in promoting the accumulation of secondary metabolites and growth of C. pilosula hairy root. Genes. 12: 1588.

2020

Guo Z.^#, Kuang Z.^#, Wang Y.^#, Zhao Y.^#, Tao Y., Cheng C., Yang J., Lu X., Hao C., Wang T., Wei J., Li L.*, Yang X.* 2020. PmiREN: a comprehensive encyclopedia of plant miRNAs. Nucleic Acids Research. 48: D1114-D1121.